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coral 0.5.0 documentation
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Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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W
A
anneal() (in module coral.analysis)
ape() (coral.DNA method)
assemble_oligos() (in module coral.reaction)
B
bind_unique() (in module coral.reaction)
C
circularize() (coral.DNA method)
coding_sequence() (in module coral.reaction)
copy() (coral.DNA method)
(coral.Feature method)
(coral.Peptide method)
(coral.Primer method)
(coral.RestrictionSite method)
coral (module)
coral.analysis (module)
coral.constants (module)
coral.database (module)
coral.design (module)
coral.reaction (module)
coral.seqio (module)
cuts_outside() (coral.RestrictionSite method)
D
design_assembly() (coral.design.OligoAssembly method)
digest() (in module coral.reaction)
dimers() (in module coral.analysis)
display() (coral.DNA method)
DNA (class in coral)
E
excise() (coral.DNA method)
extract() (coral.DNA method)
F
Feature (class in coral)
fetch_genome() (in module coral.database)
fetch_yeast_locus_sequence() (in module coral.database)
five_resect() (in module coral.reaction)
flip() (coral.DNA method)
G
gc() (coral.DNA method)
get() (coral.database.Rebase method)
get_yeast_gene_location() (in module coral.database)
get_yeast_promoter_ypa() (in module coral.database)
get_yeast_sequence() (in module coral.database)
gibson() (in module coral.design)
(in module coral.reaction)
gibson_primers() (in module coral.design)
I
is_palindrome() (coral.RestrictionSite method)
L
linearize() (coral.DNA method)
locate() (coral.DNA method)
M
MAFFT() (in module coral.analysis)
move() (coral.Feature method)
mw() (coral.DNA method)
N
needle() (in module coral.analysis)
needle_msa() (in module coral.analysis)
needle_multi() (in module coral.analysis)
nonmatches() (coral.analysis.Sanger method)
NUPACK (class in coral.analysis)
nupack_multi() (in module coral.analysis)
O
OligoAssembly (class in coral.design)
P
pcr() (in module coral.reaction)
Peptide (class in coral)
plot() (coral.analysis.Sanger method)
(coral.analysis.StructureWindows method)
Primer (class in coral)
primer() (coral.Primer method)
(in module coral.design)
primers() (coral.design.OligoAssembly method)
(in module coral.design)
R
random_codons() (in module coral.design)
random_dna() (in module coral.design)
read_dna() (in module coral.seqio)
read_sequencing() (in module coral.seqio)
Rebase (class in coral.database)
repeats() (in module coral.analysis)
RestrictionSite (class in coral)
reverse_complement() (coral.DNA method)
reverse_transcribe() (coral.RNA method)
(in module coral.reaction)
RNA (class in coral)
rotate() (coral.DNA method)
rotate_to() (coral.DNA method)
rotate_to_feature() (coral.DNA method)
S
Sanger (class in coral.analysis)
select_features() (coral.DNA method)
ssDNA (class in coral)
StructureWindows (class in coral.analysis)
T
three_resect() (in module coral.reaction)
tm() (coral.DNA method)
(in module coral.analysis)
to_ds() (coral.Primer method)
to_feature() (coral.DNA method)
transcribe() (coral.DNA method)
(in module coral.reaction)
translate() (coral.RNA method)
(in module coral.reaction)
U
update() (coral.database.Rebase method)
W
windows() (coral.analysis.StructureWindows method)
write() (coral.design.OligoAssembly method)
write_dna() (in module coral.seqio)
write_map() (coral.design.OligoAssembly method)
write_primers() (in module coral.seqio)
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